Emin Onur Karakaslar
Amsterdam, Netherlands

Post Doctoral Scientist specializing in Machine Learning for Precision Medicine
Google Scholar

Recent News

[15/09/25] Our paper is published in Leukemia

We dissect NPM1-mutated AML into finer subtypes and demonstrate that these distinctions are consistent across modalities (mRNA and cell surface proteins) using single-cell technologies.

Importantly, we also identify rare hematopoietic stem cells (HSCs), both healthy and leukemic, shedding light on the earliest events in leukemogenesis with potential implications for prognosis and therapy.

Read the paper here.

[07/05/25] Launched DuoBook (#1 post on HackerNews)


[19/03/25] Our paper in Aging Cell was recognized as one of the most cited papers of the year

Older News

[22/01/25] Presented our results at DHC’2025

[25/12/24] Our latest preprint is online

[16/09/24] ceLLama is highlighted in Nature

[16/09/24] Our paper is published in Blood Adv.

[18/05/24] Our paper is published in npj PO.

[15/02/24] Our paper is published in Leukemia

[07/01/24] Our paper is published in Nat. Immun.


Short Bio

Post-Doc in Computer Science
Leiden University Medical Center, Netherlands
2025 – present

PhD in Computer Science
Leiden University Medical Center, Netherlands
2021 – 2025

Computational Biologist
The Jackson Laboratory, USA
2019 – 2021

MSc in Computer Science
Bilkent University, Turkey
2017 – 2019

BSc in EE Engineering
Bilkent University, Turkey
2012 – 2017

Long Bio

I am a Postdoctoral Researcher at Leiden University Medical Center, where I study acute lymphoblastic leukemia (ALL) using integrative computational and genomic approaches.

My work builds on my PhD in Computational Oncology at LUMC, where I developed single-cell multi-omics and machine learning frameworks to dissect the molecular heterogeneity of acute myeloid leukemia (AML). Together, these projects aim to uncover novel biomarkers and therapeutic targets that can inform precision medicine and improve patient outcomes.

Previously, I was a Computational Biologist at The Jackson Laboratory, investigating the molecular signatures of immune aging in mouse and human cohorts. My research has been featured in leading journals, including Nature Immunology, Cell, and Leukemia, and I have presented at major international conferences.

Beyond the lab, I served as Director of Communications at Nucleate Netherlands, a non-profit that empowers early-stage bio-entrepreneurs by connecting them with the biotech ecosystem.

I hold a BSc in Electrical and Electronics Engineering and an MSc in Computer Science from Bilkent University, Turkey. Outside of research, I enjoy drumming, tennis, and world literature.

Fun weekend projects
YouTube [TR]

Blog

How to stream Kick from PS5 (For Free)

Streaming from a PS5 to Kick is notoriously annoying because Sony doesn’t have a native app for it. Most people tell you to buy a $150 capture card.…

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